Package index • codeditr

Description

codeditr-package codeditr: Implementing Cause-of-Death Data Checks Based on the WHO CoDEdit Tool

Recode

cod_recode_sex(): Recode sex value of cause-of-death data based on CoDEdit rules

cod_recode_age_type(): Recode age type of cause-of-death data based on CoDEdit rules

Calculate

cod_calculate_age() cod_calculate_ages(): Calculate age at death based on date of birth and date of death

Check

cod_check_age(): Check age values in cause-of-death data based on CoDEdit rules

cod_check_sex(): Check sex values in cause-of-death data based on CoDEdit rules

cod_check_dod(): Check date of death value in cause-of-death data based on CoDEdit rules

cod_check_codedit_input(): Check structure and values of input data to CoDEdit tool

cod_check_code() cod_check_code_structure_icd10() cod_check_code_structure_icd11() cod_check_code_ill_defined_icd10() cod_check_code_ill_defined_icd11() cod_check_code_unlikely_icd10() cod_check_code_unlikely_icd11() cod_check_code_sex_icd10_() cod_check_code_sex_icd10() cod_check_code_sex_icd11_() cod_check_code_sex_icd11() cod_check_code_age_icd10_() cod_check_code_age_icd10() cod_check_code_age_icd11_() cod_check_code_age_icd11(): Check cause-of-death code for code entry mistakes and/or code completeness

cod_check_code_summary(): Summarise cause-of-death check results

Structure

cod_structure_input(): Structure cause-of-death data into CoDEdit tool input data

Utilities

get_age_values(): Get various age values for all three age types

list_ill_defined_icd11(): List ill-defined ICD 11 codes

expand_icd10_code_range(): Enumerate ICD 10 codes given a code range

Supporting datasets

icd10_example: Example death records dataset with ICD10 cause-of-death coding

icd11_example: Example death records dataset with ICD11 cause-of-death coding

icd10_unlikely_cod: Unlikely causes of death for ICD 10

icd11_unlikely_cod: Unlikely causes of death for ICD 11

icd10_cod_by_sex: Sex-specific causes of death for ICD 10

icd11_cod_by_sex: Sex-specific causes of death for ICD 11

icd10_cod_neonate: Neonate-specific cause-of-death for ICD 10

icd11_cod_neonate: Neonate-specific cause-of-death for ICD 11

icd10_cod_child: Child-specific cause-of-death for ICD 10

icd11_cod_child: Child-specific cause-of-death for ICD 11

cod_data_raw_example: Example raw cause-of-death dataset